R6 Class for loading and analysing sequence sets

R6 Class for loading and analysing sequence sets

R6 Class for loading and analysing sequence sets

Super class

floundeR::FloundeR -> Infographic

Public fields

panel.width

defines width of an infographic block

panel.height

defines height of an infographic block

panel.spacer

defines spacing around an infographic block

panel.x.offset

defines x offset spacing for whole graphic

panel.y.offset

defines y offset spacing for whole graphic

columns

defines the number of columns to use in infographic plot

Active bindings

items

return an integer describing the number of items that is contained within the Infographic.

Methods

Public methods

Inherited methods

Method new()

Initialise a new instance of the R6 Class Infographic

Usage

Infographic$new()

Method add()

add an InfographicItem to the Infographic plot.

Usage

Infographic$add(item)

Arguments

item

an InfographicItem

Method as_tibble()

Export the contained Infographic dataset(s) as a tibble

Usage

Infographic$as_tibble()

Returns

A tibble representation for all the data

Method plot()

Plot the infographic to file (and display it immediately)

Usage

Infographic$plot(
  display_file = tempfile(pattern = "file", tmpdir = tempdir(), fileext = ".png")
)

Arguments

display_file

the file to write to the infographic to (a temp file will be created and used by default).

Method display_fa()

Display a collection of fontawesome based infographics for picking.

The fontawesome collection of icons contains over 700 icons of which some are more useful / desirable than others. This accessory method is used to render an Infographic report that summarised the available icons within a predefined range - the intention here is to make the selection of fonts to use in infographics a little simpler and easier. This replaces a dodgy notebook approach that was used previously.

Usage

Infographic$display_fa(file, offset = 0, rows = 10, columns = 6)

Arguments

file

  • a file.path to use to write the infographic to

offset

  • an integer offset defining where we should start rendering from in a broad sequence.

rows

  • the number of rows to fill with sequential data.

columns

  • the corresponding number of columns.

Method clone()

The objects of this class are cloneable with this method.

Usage

Infographic$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.