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Angenieux
|
R6 Class for visualising floundeR based datasets |
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AngenieuxDecoration
|
R6 Class for describing additional Angenieux decorations |
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Blast
|
R6 Class for loading and analysing BLAST results in basic Pairwise format |
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Fast5
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R6 Class for loading and analysing nanopore FAST5 sequence files |
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Fasta
|
R6 Class for loading and analysing FASTA files |
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Fastq
|
R6 Class for loading and analysing nanopore (and other) FASTQ files |
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FloundeR
|
R6 Class for floundeR based analyses |
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Flowcell
|
R6 Class for performing Flowcell centric analyses |
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Infographic
|
R6 Class for loading and analysing sequence sets |
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InfographicItem
|
R6 Class for loading and analysing sequence sets |
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MultiplexSet
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R6 Class for loading, visualising and analysing barcode information |
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SequencingSet
|
R6 Class for loading and analysing sequence sets |
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SequencingSummary
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R6 Class for loading and analysing nanopore sequencing_summary files |
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TemporalSet
|
R6 Class for analysing sequence sets with accompanying temporal data |
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flnDr()
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extract a floundeR packaged file |
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phredmean()
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calculate mean Phred scores from list of Q values |
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qualToMeanQ()
|
calculate mean Phred score from an ASCII encoded phred string |
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to_flowcell()
|
Prepare a flowcell object from provided class |
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to_sequencing_set()
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Prepare a SequencingSet object from provided class |